{
  "_id": "6a103e58acfb0bcc41c9c92a",
  "Package": "vimcheck",
  "Title": "Diagnostics for Vaccine Impact Modelling Consortium Burden and\nImpact Estimates",
  "Version": "0.0.3",
  "Authors@R": "c(\nperson(\"Pratik\", \"Gupte\", , \"p.gupte24@imperial.ac.uk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5294-7819\")),\nperson(\"Katy\", \"Gaythorpe\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-3734-9081\")),\nperson(\"Xiang\", \"Li\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-5945-159X\")),\nperson(\"Zoë\", \"Gibney\", role = \"aut\",\ncomment = c(ORCID = \"0009-0002-8114-9984\")),\nperson(\"Imperial College of Science, Technology and Medicine\", role = c(\"cph\", \"fnd\"))\n)",
  "Description": "Run diagnostics on burden estimates submitted by modellers\nin the Vaccine Impact Modelling Consortium (VIMC) and impact\nestimates calculated by the VIMC Science & Policy team.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/vimc/vimcheck, https://vimc.github.io/vimcheck/",
  "BugReports": "https://github.com/vimc/vimcheck/issues",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "libicu-dev libx11-dev",
  "Repository": "https://vimc.r-universe.dev",
  "Date/Publication": "2026-03-12 13:22:48 UTC",
  "RemoteUrl": "https://github.com/vimc/vimcheck",
  "RemoteRef": "main",
  "RemoteSha": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-11 09:19:29 UTC",
    "User": "root"
  },
  "Author": "Pratik Gupte [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5294-7819>),\nKaty Gaythorpe [aut] (ORCID: <https://orcid.org/0000-0003-3734-9081>),\nXiang Li [aut] (ORCID: <https://orcid.org/0000-0002-5945-159X>),\nZoë Gibney [aut] (ORCID: <https://orcid.org/0009-0002-8114-9984>),\nImperial College of Science, Technology and Medicine [cph, fnd]",
  "Maintainer": "Pratik Gupte <p.gupte24@imperial.ac.uk>",
  "MD5sum": "2480983ddc79555ce208fcf149e15510",
  "_user": "vimc",
  "_type": "src",
  "_file": "vimcheck_0.0.3.tar.gz",
  "_fileid": "3cd30362c0f29486c0c27292b9d343fd3d83f733b9a8b9553e14004195bafe86",
  "_filesize": 1244380,
  "_sha256": "3cd30362c0f29486c0c27292b9d343fd3d83f733b9a8b9553e14004195bafe86",
  "_created": "2026-05-11T09:19:29.000Z",
  "_published": "2026-05-22T11:30:32.516Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77370805862,
      "time": 160,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6914771593"
    },
    {
      "job": 77370806166,
      "time": 161,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914771441"
    },
    {
      "job": 77370805778,
      "time": 87,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6914742123"
    },
    {
      "job": 77370805792,
      "time": 98,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914746561"
    },
    {
      "job": 77370805924,
      "time": 191,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914711953"
    },
    {
      "job": 77370805430,
      "time": 117,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7159437107"
    },
    {
      "job": 77370806000,
      "time": 110,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6914750916"
    },
    {
      "job": 77370806263,
      "time": 110,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6914751481"
    },
    {
      "job": 77370806146,
      "time": 99,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6914746628"
    }
  ],
  "_buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/vimc/vimcheck",
  "_commit": {
    "id": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
    "author": "pratikunterwegs <25272594+pratikunterwegs@users.noreply.github.com>",
    "committer": "Pratik Gupte <pratikgupte16@gmail.com>",
    "message": "Update `CITATION.cff`\n",
    "time": 1773321768
  },
  "_maintainer": {
    "name": "Pratik Gupte",
    "email": "p.gupte24@imperial.ac.uk",
    "login": "pratikunterwegs",
    "linkedin": "in/pratikunterwegs",
    "orcid": "0000-0001-5294-7819",
    "uuid": 25272594
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "forcats",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "vimc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-50",
      "n": 8
    },
    {
      "week": "2026-04",
      "n": 11
    },
    {
      "week": "2026-06",
      "n": 22
    },
    {
      "week": "2026-11",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "pratikunterwegs",
      "count": 39,
      "uuid": 25272594
    }
  ],
  "_userbio": {
    "uuid": 26278316,
    "type": "organization",
    "name": "Vaccine Impact Modelling Consortium"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/vimcheck"
  },
  "_devurl": "https://github.com/vimc/vimcheck",
  "_pkgdown": "https://vimc.github.io/vimcheck/",
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/vimcheck.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "basic_burden_sanity",
    "check_demography_alignment",
    "file_dict_colnames",
    "plot_age_patterns",
    "plot_compare_demography",
    "plot_coverage_set",
    "plot_fvp",
    "plot_global_burden",
    "plot_global_burden_decades",
    "prep_plot_age",
    "prep_plot_burden_decades",
    "prep_plot_coverage_set",
    "prep_plot_demography",
    "prep_plot_fvp",
    "prep_plot_global_burden",
    "theme_vimc",
    "theme_vimc_noxaxis",
    "validate_complete_incoming_files",
    "validate_file_dict_template",
    "validate_template_alignment"
  ],
  "_datasets": [
    {
      "name": "eg_burden_template",
      "title": "Example of VIMC burden template provided to modellers",
      "object": "eg_burden_template",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "disease",
        "year",
        "age",
        "country",
        "country_name",
        "cases",
        "dalys",
        "deaths",
        "yll",
        "cohort_size",
        "scenario"
      ],
      "rows": 20402,
      "table": true,
      "tojson": true
    },
    {
      "name": "eg_coverage",
      "title": "Example of scenario coverage data",
      "object": "eg_coverage",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "scenario_type",
        "scenario_type_description",
        "scenario",
        "scenario_description",
        "coverage_set",
        "gavi_support_level",
        "source_from",
        "disease",
        "vaccine",
        "activity_type",
        "year",
        "country",
        "age_from",
        "age_to",
        "age_range_verbatim",
        "target",
        "coverage",
        "gender",
        "proportion_risk"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "eg_fvps",
      "title": "Example of FVP estimate data",
      "object": "eg_fvps",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "scenario_type",
        "scenario_type_description",
        "scenario",
        "scenario_description",
        "coverage_set",
        "gavi_support_level",
        "source_from",
        "disease",
        "vaccine",
        "activity_type",
        "year",
        "country",
        "age_from",
        "age_to",
        "age_range_verbatim",
        "target",
        "coverage",
        "gender",
        "proportion_risk",
        "job",
        "fvps",
        "fvps_adjusted",
        "target_adjusted",
        "coverage_adjusted"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "eg_wpp",
      "title": "Example of UN-WPP time-series data",
      "object": "eg_wpp",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "country",
        "year",
        "age",
        "gender",
        "value"
      ],
      "rows": 65448,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "vimcheck-package",
      "title": "vimcheck: Diagnostics for Vaccine Impact Modelling Consortium Burden and Impact Estimates",
      "topics": [
        "vimcheck-package",
        "vimcheck"
      ]
    },
    {
      "page": "basic_burden_sanity",
      "title": "Sanity checks on burden estimates",
      "topics": [
        "basic_burden_sanity"
      ]
    },
    {
      "page": "check_demography_alignment",
      "title": "Check incoming burden cohort size against interpolated population",
      "topics": [
        "check_demography_alignment"
      ]
    },
    {
      "page": "constants",
      "title": "Package constants",
      "topics": [
        "burden_outcome_names",
        "colnames_plot_demog_compare",
        "constants",
        "file_dict_colnames",
        "scenario_data_colnames"
      ]
    },
    {
      "page": "eg_burden_template",
      "title": "Example of VIMC burden template provided to modellers",
      "topics": [
        "eg_burden_template"
      ]
    },
    {
      "page": "eg_coverage",
      "title": "Example of scenario coverage data",
      "topics": [
        "eg_coverage"
      ]
    },
    {
      "page": "eg_fvps",
      "title": "Example of FVP estimate data",
      "topics": [
        "eg_fvps"
      ]
    },
    {
      "page": "eg_wpp",
      "title": "Example of UN-WPP time-series data",
      "topics": [
        "eg_wpp"
      ]
    },
    {
      "page": "plotting",
      "title": "Plot burden and impact diagnostics",
      "topics": [
        "plotting",
        "plot_age_patterns",
        "plot_compare_demography",
        "plot_coverage_set",
        "plot_fvp",
        "plot_global_burden",
        "plot_global_burden_decades"
      ]
    },
    {
      "page": "plotting_prep",
      "title": "Prepare data for plotting",
      "topics": [
        "plotting_prep",
        "prep_plot_age",
        "prep_plot_burden_decades",
        "prep_plot_coverage_set",
        "prep_plot_demography",
        "prep_plot_fvp",
        "prep_plot_global_burden"
      ]
    },
    {
      "page": "plotting_theme",
      "title": "Plotting theme for vimcheck",
      "topics": [
        "plotting_theme",
        "theme_vimc",
        "theme_vimc_noxaxis"
      ]
    },
    {
      "page": "validate_complete_incoming_files",
      "title": "Validate files in a burden estimate",
      "topics": [
        "validate_complete_incoming_files"
      ]
    },
    {
      "page": "validate_file_dict_template",
      "title": "Validate file dictionary template",
      "topics": [
        "validate_file_dict_template"
      ]
    },
    {
      "page": "validate_template_alignment",
      "title": "Check incoming burden set against template",
      "topics": [
        "validate_template_alignment"
      ]
    }
  ],
  "_readme": "https://github.com/vimc/vimcheck/raw/main/README.md",
  "_rundeps": [
    "backports",
    "bit",
    "bit64",
    "checkmate",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "dplyr",
    "farver",
    "forcats",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "hms",
    "isoband",
    "labeling",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "RColorBrewer",
    "readr",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "plotting_and_plotting_prep.Rmd",
      "filename": "plotting_and_plotting_prep.html",
      "title": "Using plotting and preparation functions",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Compare demography",
        "Examine age patterns",
        "Global burden by decade",
        "Global burden timeseries",
        "Coverage sets",
        "Fully-vaccinated persons"
      ],
      "created": "2026-02-03 09:04:46",
      "modified": "2026-02-03 09:04:46",
      "commits": 2
    },
    {
      "source": "vimcheck.Rmd",
      "filename": "vimcheck.html",
      "title": "vimcheck",
      "engine": "knitr::rmarkdown",
      "headings": [
        "References"
      ],
      "created": "2025-12-11 10:54:51",
      "modified": "2026-02-03 09:04:46",
      "commits": 2
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "vimcheck",
  "_universes": [
    "vimc",
    "pratikunterwegs"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.3",
      "date": "2026-05-11T09:22:00.000Z",
      "distro": "noble",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "40068649a2724eedd44368977c99770626502de6cd11659ad5aabbdfe9107acd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.3",
      "date": "2026-05-11T09:22:00.000Z",
      "distro": "noble",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "6288d5132f99836174d0c67389a62ab9c66fbea2e94225f1d4777eb6f3236f26",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.3",
      "date": "2026-05-11T09:20:53.000Z",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "978faa00403ec6a87285ed68ed9dc053bac6748a45f8dd16eab513fad0eab0f6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.3",
      "date": "2026-05-11T09:21:01.000Z",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "b7fc50d30bf1e8904e1b176de42c23c422a484021f0072da74e39c03ad70c28d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.3",
      "date": "2026-05-11T09:20:54.000Z",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "b67f4bfefd1226746a941b33a51489e21738b145a4d7d1c7270d9d258e37e103",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.3",
      "date": "2026-05-11T09:20:58.000Z",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "9ed564373e2e3fb815296a3c64771e05a969d8d2b1a929b25845a93da49a8be9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.3",
      "date": "2026-05-11T09:20:43.000Z",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "c66ca2179a3d9dfaf4af1999c591f563078e4681cb36e82043247a291409e5cc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.3",
      "date": "2026-05-22T11:30:16.000Z",
      "commit": "abb2e5b02975b3ed7b8baf819e042dd907fab298",
      "fileid": "7dde3aa9f6f749e87b8ef7b8224f2a6570470b72b034fbca13c7890cf4e78c7c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/vimc/actions/runs/25661321020"
    }
  ]
}