Package: montagu 0.6.1

Rich FitzJohn

montagu: Interface with 'montagu'

Client for interacting with the montagu API, and authentication with the montagu OrderlyWeb instance. This package is part of montagu.

Authors:Rich FitzJohn [aut, cre], Wes Hinsley [aut]

montagu_0.6.1.tar.gz
montagu_0.6.1.zip(r-4.7)montagu_0.6.1.zip(r-4.6)montagu_0.6.1.zip(r-4.5)
montagu_0.6.1.tgz(r-4.6-any)montagu_0.6.1.tgz(r-4.5-any)
montagu_0.6.1.tar.gz(r-4.7-any)montagu_0.6.1.tar.gz(r-4.6-any)
montagu_0.6.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
montagu/json (API)

# Install 'montagu' in R:

install.packages('montagu', repos = c('https://vimc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vimc/montagu-r/issues

On CRAN:

3.48 score 2 stars 3 scripts 44 exports 22 dependencies

Last updated from:3e9359af07 (on master). Checks:7 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	ERROR	135
source / vignettes	OK	191
linux-release-x86_64	ERROR	129
macos-release-arm64	ERROR	86
macos-oldrel-arm64	ERROR	78
windows-devel	ERROR	101
windows-release	ERROR	100
windows-oldrel	ERROR	67
wasm-release	OK	119

Dependencies:askpass cli crayon curl digest getPass glue hms httr jsonlite lifecycle mime openssl pkgconfig prettyunits progress R6 rlang rstudioapi storr sys vctrs

Montagu API from R

Rendered frommontagu_user_guide.Rmdusingknitr::rmarkdown

Last update: 2019-10-08
Started: 2019-02-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Deletes all uploaded rows from an incomplete burden estimate set	montagu_burden_estimate_set_clear
Closes a burden estimate set, marking it as complete.	montagu_burden_estimate_set_close
Create a new burden estimate set	montagu_burden_estimate_set_create
Retrieves the data for a specific burden estimate set.	montagu_burden_estimate_set_data
Retrieves information about a specific burden estimate set.	montagu_burden_estimate_set_info
Retrieve data for a particular outcoe of a burden estimate set, aggregated across country and disaggregated by either age or year.	montagu_burden_estimate_set_outcome_data
Retrieves information about a specific burden estimate set.	montagu_burden_estimate_set_problems
Deletes all uploaded rows from an incomplete burden estimate set	montagu_burden_estimate_set_upload
Retrieves list of estimate sets for a group, touchstone and scenario.	montagu_burden_estimate_sets
Get central burden estimate template for an expectation	montagu_central_burden_estimate_template
Retrieve coverage data for a scenario, touchstone and modelling group.	montagu_coverage_data
Retrieve metadata for coverage sets for a particularly group, touchstone and scenario.	montagu_coverage_info
Get information on current estimate set for a scenario.	montagu_current_estimate_set_info
Retrieve list of any problems in current estimate set for a scenario.	montagu_current_estimate_set_problems
Download demographic data for a given touchstone.	montagu_demographic_data
List the demographic data available for a given touchstone.	montagu_demographics_list
Retrieve disease with given id.	montagu_disease
Retrieve list of all disease ids and names.	montagu_diseases
Get information about an expectation	montagu_expectation
Get applicable scenarios for an expectation	montagu_expectation_applicable_scenarios
Get country list for an expectation	montagu_expectation_countries
Get expected outcomes	montagu_expectation_outcomes
Get expectations for a modelling group and touchstone	montagu_expectations
Retrieve model with given id.	montagu_model
Retrieve list of models for a given modelling_group_id.	montagu_model_list
Retrieve info about one model run parameter sets for a group and touchstone	montagu_model_run_parameter_set_data
Retrieve info about one model run parameter sets for a group and touchstone	montagu_model_run_parameter_set_info
Upload a model_run_parameter_set to Montagu.	montagu_model_run_parameter_set_upload
Retrieve a list of model run parameter sets for a group and touchstone	montagu_model_run_parameter_sets
Retrieve modelling_group with given modelling_group_id.	montagu_modelling_group
Retrieve list of members for a given modelling_group_id.	montagu_modelling_group_members
Retrieve list of all modelling group ids and names.	montagu_modelling_groups
Retrieve list of all model ids, names, citations and groups.	montagu_models
orderly remote driver	montagu_orderlyweb_remote
Retrieve a list of any problems with a scenario.	montagu_scenario_problems
Retrieve current status of a groups' scenario.	montagu_scenario_status
Retrieve information about a scenario	montagu_scenarios
Create a handle to a montagu server	montagu_server
Set a global default montagu server	montagu_server_global_default_set
List known montagu servers	montagu_server_global_list
Get stochastic burden estimate template for an expectation	montagu_stochastic_burden_estimate_template
Retrieve list of all versions of a given touchstone.	montagu_touchstone_versions
Retrieve touchstones a modelling group is responsible for.	montagu_touchstones
Get touchstones that include this scenario	montagu_touchstones_for_scenario